PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29883.m001956
Common NameLOC8276684, RCOM_0990360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 466aa    MW: 51207.5 Da    PI: 9.1951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29883.m001956genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0578100123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  29883.m001956  78 FVCEICNKGFQRDQNLQLHRRGH 100
                    89*******************88 PP

2zf-C2H212.30.00052154176123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +t+
  29883.m001956 154 WKCEKCSKIYAVQSDWKAHSKTC 176
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.9E-677100No hitNo description
SMARTSM003550.01778100IPR015880Zinc finger, C2H2-like
PfamPF121717.3E-578100IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94978100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355280119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.9E-6149174No hitNo description
SMARTSM00355170154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MFPAAMSNST SLSEDASVSS GNRVVQDFCG LNQIVSTISP QQQQQQKIKK KRSLPGNPDP  60
DAEVVALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN SKEIKKRAYV  120
CPEPSCVHHH PSRALGDLTG IKKHYCRKHG EKKWKCEKCS KIYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RKDSFITHRA FCDALAEESA RLSAHQLLST NPTAQTLLLQ QNPPSHSLFP  240
LPISHNPWDP PPPPLHHHQN PSNSSSSNNN PSNPVQIKPE THHFHLPPLF HESPPPLPPT  300
DKATGNLIPS SLFQTLSHAA TSASSHHLSA TALLQKAATV GATQTAAGHS QMTRLDIGEL  360
VAVSQAADSA RQQQQQAAYM GGNLATWQKN DRLTRDFLGL TGDHSSGNVA NGSGGVSVSM  420
NVREMLTYTW GVGMQHYNSD RDHSLLKPHG FGFGQPPAAS ETWGDC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520944.10.0PREDICTED: protein indeterminate-domain 12
SwissprotO227591e-133IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLB9S4N70.0B9S4N7_RICCO; Nucleic acid binding protein, putative
STRINGPOPTR_0002s04880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-114indeterminate(ID)-domain 12